{ "cells": [ { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [], "source": [ "import os\n", "from sonnia.sonnia import SoNNia\n", "from sonnia.sonia import Sonia\n", "from sonnia.plotting import Plotter\n", "import numpy as np\n", "import pandas as pd\n", "from sonnia.utils import filter_seqs" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "# load lists of sequences with gene specification" ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
| \n", " | junction_aa | \n", "v_gene | \n", "j_gene | \n", "
|---|---|---|---|
| 0 | \n", "CASSKQGASEAFF | \n", "TRBV7-8 | \n", "TRBJ1-1 | \n", "
| 1 | \n", "CASSPPPNYGYTF | \n", "TRBV6-1 | \n", "TRBJ1-2 | \n", "
| 2 | \n", "CASSTDTTEAFF | \n", "TRBV6-5 | \n", "TRBJ1-1 | \n", "
| 3 | \n", "CATERGGAPGFADTQYF | \n", "TRBV11-2 | \n", "TRBJ2-3 | \n", "
| 4 | \n", "CASSLITGENTEAFF | \n", "TRBV5-4 | \n", "TRBJ1-1 | \n", "